Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.6HG0449760

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0449760
Locus	HORVU.MOREX.r2.6HG0449760.1
URL	Gene Ontology GO:0000139 [ Show all 30 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 32 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: MADS-box transcription factor GO:0000139; cellular_component; Golgi membrane GO:0002376; biological_process; immune system process GO:0002504; biological_process; antigen processing and presentation of peptide or polysaccharide antigen via MHC class II GO:0005764; cellular_component; lysosome GO:0005765; cellular_component; lysosomal membrane GO:0005768; cellular_component; endosome GO:0005783; cellular_component; endoplasmic reticulum GO:0005789; cellular_component; endoplasmic reticulum membrane GO:0005794; cellular_component; Golgi apparatus GO:0005886; cellular_component; plasma membrane GO:0006955; biological_process; immune response GO:0009986; cellular_component; cell surface GO:0010008; cellular_component; endosome membrane GO:0012507; cellular_component; ER to Golgi transport vesicle membrane GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0019882; biological_process; antigen processing and presentation GO:0019886; biological_process; antigen processing and presentation of exogenous peptide antigen via MHC class II GO:0030658; cellular_component; transport vesicle membrane GO:0030666; cellular_component; endocytic vesicle membrane GO:0030669; cellular_component; clathrin-coated endocytic vesicle membrane GO:0032588; cellular_component; trans-Golgi network membrane GO:0032729; biological_process; positive regulation of interferon-gamma production GO:0042102; biological_process; positive regulation of T cell proliferation GO:0042605; molecular_function; peptide antigen binding GO:0042613; cellular_component; MHC class II protein complex GO:0050852; biological_process; T cell receptor signaling pathway GO:0050870; biological_process; positive regulation of T cell activation GO:0060333; biological_process; interferon-gamma-mediated signaling pathway GO:0071556; cellular_component; integral component of lumenal side of endoplasmic reticulum membrane
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0449760.1
Source Gene	AGL1 (Hordeum)
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)