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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0449160

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0449160
Locus	HORVU.MOREX.r2.6HG0449160.1
URL	Gene Ontology GO:0000980 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 23 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Low-density lipoprotein receptor-related protein 1B GO:0000978; molecular_function; RNA polymerase II cis-regulatory region sequence-specific DNA binding The GO term GO:0000980 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0000978 GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0000977; molecular_function; RNA polymerase II regulatory region sequence-specific DNA binding GO:0001162; molecular_function; RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding GO:0003676; molecular_function; nucleic acid binding GO:0003677; molecular_function; DNA binding GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0007275; biological_process; multicellular organism development GO:0007283; biological_process; spermatogenesis GO:0007548; biological_process; sex differentiation GO:0008022; molecular_function; protein C-terminus binding GO:0008406; biological_process; gonad development GO:0019099; biological_process; female germ-line sex determination GO:0019101; biological_process; female somatic sex determination GO:0030154; biological_process; cell differentiation GO:0043525; biological_process; positive regulation of neuron apoptotic process GO:0043565; molecular_function; sequence-specific DNA binding GO:0046872; molecular_function; metal ion binding
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0449160.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)