Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.5HG0446480

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0446480
Locus	HORVU.MOREX.r2.5HG0446480.1
URL	Gene Ontology GO:0004003 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 23 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Dehydrogenase/reductase SDR family protein GO:0003678; molecular_function; DNA helicase activity The GO term GO:0004003 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003678 GO:0000166; molecular_function; nucleotide binding GO:0000723; biological_process; telomere maintenance GO:0003677; molecular_function; DNA binding GO:0003684; molecular_function; damaged DNA binding GO:0003690; molecular_function; double-stranded DNA binding GO:0004386; molecular_function; helicase activity GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0006281; biological_process; DNA repair GO:0006302; biological_process; double-strand break repair GO:0006303; biological_process; double-strand break repair via nonhomologous end joining GO:0006310; biological_process; DNA recombination GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0009408; biological_process; response to heat GO:0016787; molecular_function; hydrolase activity GO:0016817; molecular_function; hydrolase activity, acting on acid anhydrides GO:0032508; biological_process; DNA duplex unwinding GO:0042162; molecular_function; telomeric DNA binding GO:0043564; cellular_component; Ku70:Ku80 complex
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0446480.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)