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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0444440

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0444440
Locus	HORVU.MOREX.r2.5HG0444440.1
URL	Gene Ontology GO:0000981 [ Show all 40 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 42 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Sec14p-like phosphatidylinositol transfer family protein GO:0000981; molecular_function; DNA-binding transcription factor activity, RNA polymerase II-specific GO:0001501; biological_process; skeletal system development GO:0002674; biological_process; negative regulation of acute inflammatory response GO:0003677; molecular_function; DNA binding GO:0003682; molecular_function; chromatin binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005694; cellular_component; chromosome GO:0005794; cellular_component; Golgi apparatus GO:0005923; cellular_component; bicellular tight junction GO:0006323; biological_process; DNA packaging GO:0006325; biological_process; chromatin organization GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006366; biological_process; transcription by RNA polymerase II GO:0007267; biological_process; cell-cell signaling GO:0007338; biological_process; single fertilization GO:0008168; molecular_function; methyltransferase activity GO:0009791; biological_process; post-embryonic development GO:0010468; biological_process; regulation of gene expression GO:0016740; molecular_function; transferase activity GO:0018024; molecular_function; histone-lysine N-methyltransferase activity GO:0030054; cellular_component; cell junction GO:0032259; biological_process; methylation GO:0032635; biological_process; interleukin-6 production GO:0042800; molecular_function; histone methyltransferase activity (H3-K4 specific) GO:0043124; biological_process; negative regulation of I-kappaB kinase/NF-kappaB signaling GO:0043409; biological_process; negative regulation of MAPK cascade GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046697; biological_process; decidualization GO:0046872; molecular_function; metal ion binding GO:0046975; molecular_function; histone methyltransferase activity (H3-K36 specific) GO:0048733; biological_process; sebaceous gland development GO:0050728; biological_process; negative regulation of inflammatory response GO:0051568; biological_process; histone H3-K4 methylation GO:0061038; biological_process; uterus morphogenesis GO:0097676; biological_process; histone H3-K36 dimethylation GO:0097722; biological_process; sperm motility GO:1903699; biological_process; tarsal gland development GO:1903709; biological_process; uterine gland development
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0444440.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)