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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0443380

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0443380
Locus	HORVU.MOREX.r2.5HG0443380.1
URL	Gene Ontology GO:0000166 [ Show all 56 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 58 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: transmembrane protein, putative (DUF594) GO:0000166; molecular_function; nucleotide binding GO:0002250; biological_process; adaptive immune response GO:0002376; biological_process; immune system process GO:0002407; biological_process; dendritic cell chemotaxis GO:0002724; biological_process; regulation of T cell cytokine production GO:0005216; molecular_function; ion channel activity GO:0005227; molecular_function; calcium activated cation channel activity GO:0005244; molecular_function; voltage-gated ion channel activity GO:0005262; molecular_function; calcium channel activity GO:0005509; molecular_function; calcium ion binding GO:0005516; molecular_function; calmodulin binding GO:0005524; molecular_function; ATP binding GO:0005654; cellular_component; nucleoplasm GO:0005783; cellular_component; endoplasmic reticulum GO:0005794; cellular_component; Golgi apparatus GO:0005829; cellular_component; cytosol GO:0005886; cellular_component; plasma membrane GO:0006811; biological_process; ion transport GO:0006812; biological_process; cation transport GO:0006816; biological_process; calcium ion transport GO:0007204; biological_process; positive regulation of cytosolic calcium ion concentration GO:0008284; biological_process; positive regulation of cell population proliferation GO:0010460; biological_process; positive regulation of heart rate GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016925; biological_process; protein sumoylation GO:0019722; biological_process; calcium-mediated signaling GO:0030502; biological_process; negative regulation of bone mineralization GO:0034220; biological_process; ion transmembrane transport GO:0034706; cellular_component; sodium channel complex GO:0035774; biological_process; positive regulation of insulin secretion involved in cellular response to glucose stimulus GO:0042310; biological_process; vasoconstriction GO:0042391; biological_process; regulation of membrane potential GO:0043025; cellular_component; neuronal cell body GO:0044214; cellular_component; spanning component of plasma membrane GO:0045600; biological_process; positive regulation of fat cell differentiation GO:0045668; biological_process; negative regulation of osteoblast differentiation GO:0045907; biological_process; positive regulation of vasoconstriction GO:0046872; molecular_function; metal ion binding GO:0051289; biological_process; protein homotetramerization GO:0055085; biological_process; transmembrane transport GO:0061337; biological_process; cardiac conduction GO:0070588; biological_process; calcium ion transmembrane transport GO:0071318; biological_process; cellular response to ATP GO:0086045; biological_process; membrane depolarization during AV node cell action potential GO:0086047; biological_process; membrane depolarization during Purkinje myocyte cell action potential GO:0086048; biological_process; membrane depolarization during bundle of His cell action potential GO:0086091; biological_process; regulation of heart rate by cardiac conduction GO:0089717; cellular_component; spanning component of membrane GO:0090263; biological_process; positive regulation of canonical Wnt signaling pathway GO:0098662; biological_process; inorganic cation transmembrane transport GO:0098719; biological_process; sodium ion import across plasma membrane GO:0098911; biological_process; regulation of ventricular cardiac muscle cell action potential GO:1903949; biological_process; positive regulation of atrial cardiac muscle cell action potential GO:1904179; biological_process; positive regulation of adipose tissue development GO:1904199; biological_process; positive regulation of regulation of vascular smooth muscle cell membrane depolarization
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0443380.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)