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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0441210

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0441210
Locus	HORVU.MOREX.r2.5HG0441210.1
URL	Gene Ontology GO:0001172 [ Show all 31 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 33 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Kinesin-like GO:0001172; biological_process; transcription, RNA-templated GO:0003676; molecular_function; nucleic acid binding GO:0003723; molecular_function; RNA binding GO:0003968; molecular_function; RNA-directed 5'-3' RNA polymerase activity GO:0004197; molecular_function; cysteine-type endopeptidase activity GO:0006508; biological_process; proteolysis GO:0008233; molecular_function; peptidase activity GO:0008234; molecular_function; cysteine-type peptidase activity GO:0008242; molecular_function; omega peptidase activity GO:0008270; molecular_function; zinc ion binding GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016032; biological_process; viral process GO:0016740; molecular_function; transferase activity GO:0016787; molecular_function; hydrolase activity GO:0019079; biological_process; viral genome replication GO:0019082; biological_process; viral protein processing GO:0030430; cellular_component; host cell cytoplasm GO:0030683; biological_process; mitigation of host immune response by virus GO:0033644; cellular_component; host cell membrane GO:0036459; molecular_function; thiol-dependent ubiquitinyl hydrolase activity GO:0039502; biological_process; suppression by virus of host type I interferon-mediated signaling pathway GO:0039503; biological_process; suppression by virus of host innate immune response GO:0039520; biological_process; induction by virus of host autophagy GO:0039548; biological_process; suppression by virus of host IRF3 activity GO:0039579; biological_process; suppression by virus of host ISG15 activity GO:0039595; biological_process; induction by virus of catabolism of host mRNA GO:0039648; biological_process; modulation by virus of host protein ubiquitination GO:0039657; biological_process; suppression by virus of host gene expression GO:0044220; cellular_component; host cell perinuclear region of cytoplasm GO:0046872; molecular_function; metal ion binding
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0441210.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)