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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0436480

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0436480
Locus	HORVU.MOREX.r2.5HG0436480.1
URL	Gene Ontology GO:0005506 [ Show all 16 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 18 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Pentatricopeptide repeat (PPR) superfamily protein GO:0005506; molecular_function; iron ion binding GO:0005634; cellular_component; nucleus GO:0005730; cellular_component; nucleolus GO:0006325; biological_process; chromatin organization GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0016491; molecular_function; oxidoreductase activity GO:0016706; molecular_function; 2-oxoglutarate-dependent dioxygenase activity GO:0032453; molecular_function; histone demethylase activity (H3-K4 specific) GO:0034720; biological_process; histone H3-K4 demethylation GO:0045892; biological_process; negative regulation of transcription, DNA-templated GO:0046872; molecular_function; metal ion binding GO:0051213; molecular_function; dioxygenase activity GO:0051864; molecular_function; histone demethylase activity (H3-K36 specific) GO:0055114; biological_process; oxidation-reduction process GO:0070544; biological_process; histone H3-K36 demethylation
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0436480.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)