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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0434710

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Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.


Probe
HORVU.MOREX.r2.5HG0434710
Locus
HORVU.MOREX.r2.5HG0434710.1
URL
Gene Ontology GO:0003345
[ Show all 26 ]
Reference
ReferenceMonat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks
[ Hide all but 1 of 28 ]
Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database).
Functional annotation published with the genome: Protein TAPETUM DETERMINANT 1
GO:0003345; biological_process; proepicardium cell migration involved in pericardium morphogenesis
GO:0005576; cellular_component; extracellular region
GO:0005783; cellular_component; endoplasmic reticulum
GO:0005789; cellular_component; endoplasmic reticulum membrane
GO:0005886; cellular_component; plasma membrane
GO:0005887; cellular_component; integral component of plasma membrane
GO:0005925; cellular_component; focal adhesion
GO:0007155; biological_process; cell adhesion
GO:0007275; biological_process; multicellular organism development
GO:0007416; biological_process; synapse assembly
GO:0007507; biological_process; heart development
GO:0008543; biological_process; fibroblast growth factor receptor signaling pathway
GO:0016020; cellular_component; membrane
GO:0016021; cellular_component; integral component of membrane
GO:0030054; cellular_component; cell junction
GO:0030424; cellular_component; axon
GO:0031175; biological_process; neuron projection development
GO:0042995; cellular_component; cell projection
GO:0043679; cellular_component; axon terminus
GO:0044295; cellular_component; axonal growth cone
GO:0048598; biological_process; embryonic morphogenesis
GO:0048678; biological_process; response to axon injury
GO:0060322; biological_process; head development
GO:0097060; cellular_component; synaptic membrane
GO:0098742; biological_process; cell-cell adhesion via plasma-membrane adhesion molecules
GO:1990138; biological_process; neuron projection extension
Type
Genomic
Sequence
HORVU.MOREX.r2.5HG0434710.1
Source Species
Hordeum vulgare
Source Germplasm
Morex (barley)