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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0432930
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Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe
HORVU.MOREX.r2.5HG0432930

Locus
HORVU.MOREX.r2.5HG0432930.1

URL
Gene Ontology GO:0001516

[ Show all 19 ]

Reference

Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.

General Remarks
[ Hide all but 1 of 21 ]
Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta).
Functional annotation published with the genome: Thioredoxin family protein
GO:0001516; biological_process; prostaglandin biosynthetic process
GO:0004667; molecular_function; prostaglandin-D synthase activity
GO:0005501; molecular_function; retinoid binding
GO:0005576; cellular_component; extracellular region
GO:0005634; cellular_component; nucleus
GO:0005737; cellular_component; cytoplasm
GO:0005783; cellular_component; endoplasmic reticulum
GO:0005791; cellular_component; rough endoplasmic reticulum
GO:0005794; cellular_component; Golgi apparatus
GO:0006629; biological_process; lipid metabolic process
GO:0006631; biological_process; fatty acid metabolic process
GO:0006633; biological_process; fatty acid biosynthetic process
GO:0006693; biological_process; prostaglandin metabolic process
GO:0016020; cellular_component; membrane
GO:0016853; molecular_function; isomerase activity
GO:0031965; cellular_component; nuclear membrane
GO:0036094; molecular_function; small molecule binding
GO:0045187; biological_process; regulation of circadian sleep/wake cycle, sleep
GO:0048471; cellular_component; perinuclear region of cytoplasm

Type
Genomic

Sequence
HORVU.MOREX.r2.5HG0432930.1

Source Species
Hordeum vulgare

Source Germplasm
Morex (barley)