Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.5HG0419210

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0419210
Locus	HORVU.MOREX.r2.5HG0419210.1
URL	Gene Ontology GO:0003676 [ Show all 46 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 48 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Leucine-rich repeat protein kinase family protein GO:0003676; molecular_function; nucleic acid binding GO:0003677; molecular_function; DNA binding GO:0003723; molecular_function; RNA binding GO:0003824; molecular_function; catalytic activity GO:0003887; molecular_function; DNA-directed DNA polymerase activity GO:0003964; molecular_function; RNA-directed DNA polymerase activity GO:0004190; molecular_function; aspartic-type endopeptidase activity GO:0004518; molecular_function; nuclease activity GO:0004519; molecular_function; endonuclease activity GO:0004523; molecular_function; RNA-DNA hybrid ribonuclease activity GO:0004533; molecular_function; exoribonuclease H activity GO:0005198; molecular_function; structural molecule activity GO:0006278; biological_process; RNA-dependent DNA biosynthetic process GO:0006310; biological_process; DNA recombination GO:0006508; biological_process; proteolysis GO:0008152; biological_process; metabolic process GO:0008233; molecular_function; peptidase activity GO:0008270; molecular_function; zinc ion binding GO:0008289; molecular_function; lipid binding GO:0015074; biological_process; DNA integration GO:0016020; cellular_component; membrane GO:0016032; biological_process; viral process GO:0016740; molecular_function; transferase activity GO:0016779; molecular_function; nucleotidyltransferase activity GO:0016787; molecular_function; hydrolase activity GO:0019012; cellular_component; virion GO:0019013; cellular_component; viral nucleocapsid GO:0019028; cellular_component; viral capsid GO:0020002; cellular_component; host cell plasma membrane GO:0030430; cellular_component; host cell cytoplasm GO:0033644; cellular_component; host cell membrane GO:0039526; biological_process; modulation by virus of host apoptotic process GO:0039651; biological_process; induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process GO:0039657; biological_process; suppression by virus of host gene expression GO:0042025; cellular_component; host cell nucleus GO:0044174; cellular_component; host cell endosome GO:0044826; biological_process; viral genome integration into host DNA GO:0046718; biological_process; viral entry into host cell GO:0046872; molecular_function; metal ion binding GO:0055036; cellular_component; virion membrane GO:0072494; cellular_component; host multivesicular body GO:0075713; biological_process; establishment of integrated proviral latency GO:0075732; biological_process; viral penetration into host nucleus GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis GO:0090502; biological_process; RNA phosphodiester bond hydrolysis, endonucleolytic GO:0090503; biological_process; RNA phosphodiester bond hydrolysis, exonucleolytic
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0419210.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)