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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0402370

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0402370
Locus	HORVU.MOREX.r2.5HG0402370.1
URL	Gene Ontology GO:0000166 [ Show all 34 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 36 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Retrovirus-related Pol polyprotein from transposon TNT 1-94 GO:0000166; molecular_function; nucleotide binding GO:0004672; molecular_function; protein kinase activity GO:0004674; molecular_function; protein serine/threonine kinase activity GO:0004712; molecular_function; protein serine/threonine/tyrosine kinase activity GO:0004713; molecular_function; protein tyrosine kinase activity GO:0004715; molecular_function; non-membrane spanning protein tyrosine kinase activity GO:0005102; molecular_function; signaling receptor binding GO:0005515; molecular_function; protein binding GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005768; cellular_component; endosome GO:0005886; cellular_component; plasma membrane GO:0005905; cellular_component; clathrin-coated pit GO:0005912; cellular_component; adherens junction GO:0006468; biological_process; protein phosphorylation GO:0006897; biological_process; endocytosis GO:0007165; biological_process; signal transduction GO:0007169; biological_process; transmembrane receptor protein tyrosine kinase signaling pathway GO:0016020; cellular_component; membrane GO:0016301; molecular_function; kinase activity GO:0016310; biological_process; phosphorylation GO:0016477; biological_process; cell migration GO:0016740; molecular_function; transferase activity GO:0030054; cellular_component; cell junction GO:0030136; cellular_component; clathrin-coated vesicle GO:0030154; biological_process; cell differentiation GO:0030659; cellular_component; cytoplasmic vesicle membrane GO:0031234; cellular_component; extrinsic component of cytoplasmic side of plasma membrane GO:0031410; cellular_component; cytoplasmic vesicle GO:0038083; biological_process; peptidyl-tyrosine autophosphorylation GO:0042127; biological_process; regulation of cell population proliferation GO:0045087; biological_process; innate immune response GO:0046872; molecular_function; metal ion binding
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0402370.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)