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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0398250

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0398250
Locus	HORVU.MOREX.r2.5HG0398250.1
URL	Gene Ontology GO:0000166 [ Show all 57 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 59 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transmembrane protein 87A GO:0000166; molecular_function; nucleotide binding GO:0000794; cellular_component; condensed nuclear chromosome GO:0002020; molecular_function; protease binding GO:0002576; biological_process; platelet degranulation GO:0003300; biological_process; cardiac muscle hypertrophy GO:0004672; molecular_function; protein kinase activity GO:0004674; molecular_function; protein serine/threonine kinase activity GO:0004713; molecular_function; protein tyrosine kinase activity GO:0005509; molecular_function; calcium ion binding GO:0005515; molecular_function; protein binding GO:0005516; molecular_function; calmodulin binding GO:0005524; molecular_function; ATP binding GO:0005576; cellular_component; extracellular region GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0005859; cellular_component; muscle myosin complex GO:0005865; cellular_component; striated muscle thin filament GO:0006468; biological_process; protein phosphorylation GO:0006936; biological_process; muscle contraction GO:0006941; biological_process; striated muscle contraction GO:0007076; biological_process; mitotic chromosome condensation GO:0008307; molecular_function; structural constituent of muscle GO:0010628; biological_process; positive regulation of gene expression GO:0010737; biological_process; protein kinase A signaling GO:0016301; molecular_function; kinase activity GO:0016310; biological_process; phosphorylation GO:0016740; molecular_function; transferase activity GO:0018108; biological_process; peptidyl-tyrosine phosphorylation GO:0019899; molecular_function; enzyme binding GO:0019901; molecular_function; protein kinase binding GO:0030018; cellular_component; Z disc GO:0030049; biological_process; muscle filament sliding GO:0030240; biological_process; skeletal muscle thin filament assembly GO:0030241; biological_process; skeletal muscle myosin thick filament assembly GO:0031430; cellular_component; M band GO:0031433; molecular_function; telethonin binding GO:0031674; cellular_component; I band GO:0035995; biological_process; detection of muscle stretch GO:0042802; molecular_function; identical protein binding GO:0042805; molecular_function; actinin binding GO:0043621; molecular_function; protein self-association GO:0045214; biological_process; sarcomere organization GO:0045859; biological_process; regulation of protein kinase activity GO:0046872; molecular_function; metal ion binding GO:0048739; biological_process; cardiac muscle fiber development GO:0048769; biological_process; sarcomerogenesis GO:0050714; biological_process; positive regulation of protein secretion GO:0050790; biological_process; regulation of catalytic activity GO:0051015; molecular_function; actin filament binding GO:0051371; molecular_function; muscle alpha-actinin binding GO:0051592; biological_process; response to calcium ion GO:0055003; biological_process; cardiac myofibril assembly GO:0055008; biological_process; cardiac muscle tissue morphogenesis GO:0060048; biological_process; cardiac muscle contraction GO:0070062; cellular_component; extracellular exosome GO:0097493; molecular_function; structural molecule activity conferring elasticity
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0398250.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)