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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0397730

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0397730
Locus	HORVU.MOREX.r2.5HG0397730.1
URL	Gene Ontology GO:0004177 [ Show all 15 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 17 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Gag-Pol polyprotein/retrotransposon GO:0004177; molecular_function; aminopeptidase activity GO:0005737; cellular_component; cytoplasm GO:0005773; cellular_component; vacuole GO:0005774; cellular_component; vacuolar membrane GO:0005829; cellular_component; cytosol GO:0006508; biological_process; proteolysis GO:0006518; biological_process; peptide metabolic process GO:0008233; molecular_function; peptidase activity GO:0008237; molecular_function; metallopeptidase activity GO:0008270; molecular_function; zinc ion binding GO:0016787; molecular_function; hydrolase activity GO:0046686; biological_process; response to cadmium ion GO:0046872; molecular_function; metal ion binding GO:0061077; biological_process; chaperone-mediated protein folding GO:0070006; molecular_function; metalloaminopeptidase activity
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0397730.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)