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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0363420

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0363420
Locus	HORVU.MOREX.r2.5HG0363420.1
URL	Gene Ontology GO:0000175 [ Show all 51 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 53 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Zinc finger protein, putative GO:0000175; molecular_function; 3'-5'-exoribonuclease activity GO:0000957; biological_process; mitochondrial RNA catabolic process GO:0000958; biological_process; mitochondrial mRNA catabolic process GO:0000962; biological_process; positive regulation of mitochondrial RNA catabolic process GO:0000964; biological_process; mitochondrial RNA 5'-end processing GO:0000965; biological_process; mitochondrial RNA 3'-end processing GO:0003676; molecular_function; nucleic acid binding GO:0003723; molecular_function; RNA binding GO:0004518; molecular_function; nuclease activity GO:0004527; molecular_function; exonuclease activity GO:0004654; molecular_function; polyribonucleotide nucleotidyltransferase activity GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005739; cellular_component; mitochondrion GO:0005758; cellular_component; mitochondrial intermembrane space GO:0005789; cellular_component; endoplasmic reticulum membrane GO:0005829; cellular_component; cytosol GO:0006396; biological_process; RNA processing GO:0006397; biological_process; mRNA processing GO:0006401; biological_process; RNA catabolic process GO:0006402; biological_process; mRNA catabolic process GO:0008266; molecular_function; poly(U) RNA binding GO:0016020; cellular_component; membrane GO:0016740; molecular_function; transferase activity GO:0016779; molecular_function; nucleotidyltransferase activity GO:0016787; molecular_function; hydrolase activity GO:0034046; molecular_function; poly(G) binding GO:0034599; biological_process; cellular response to oxidative stress GO:0035198; molecular_function; miRNA binding GO:0035458; biological_process; cellular response to interferon-beta GO:0035927; biological_process; RNA import into mitochondrion GO:0035928; biological_process; rRNA import into mitochondrion GO:0042788; cellular_component; polysomal ribosome GO:0043457; biological_process; regulation of cellular respiration GO:0043631; biological_process; RNA polyadenylation GO:0045025; cellular_component; mitochondrial degradosome GO:0045926; biological_process; negative regulation of growth GO:0051260; biological_process; protein homooligomerization GO:0051591; biological_process; response to cAMP GO:0060416; biological_process; response to growth hormone GO:0061014; biological_process; positive regulation of mRNA catabolic process GO:0070207; biological_process; protein homotrimerization GO:0070584; biological_process; mitochondrion morphogenesis GO:0071042; biological_process; nuclear polyadenylation-dependent mRNA catabolic process GO:0071850; biological_process; mitotic cell cycle arrest GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis GO:0090503; biological_process; RNA phosphodiester bond hydrolysis, exonucleolytic GO:0097222; biological_process; mitochondrial mRNA polyadenylation GO:0097421; biological_process; liver regeneration GO:2000627; biological_process; positive regulation of miRNA catabolic process GO:2000772; biological_process; regulation of cellular senescence
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0363420.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)