Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.5HG0356720

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0356720
Locus	HORVU.MOREX.r2.5HG0356720.1
URL	Gene Ontology GO:0000329 [ Show all 17 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 19 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: LURP-one-like protein GO:0000329; cellular_component; fungal-type vacuole membrane GO:0000422; biological_process; autophagy of mitochondrion GO:0005768; cellular_component; endosome GO:0005773; cellular_component; vacuole GO:0005774; cellular_component; vacuolar membrane GO:0005829; cellular_component; cytosol GO:0006497; biological_process; protein lipidation GO:0006914; biological_process; autophagy GO:0010008; cellular_component; endosome membrane GO:0015031; biological_process; protein transport GO:0016020; cellular_component; membrane GO:0019898; cellular_component; extrinsic component of membrane GO:0032266; molecular_function; phosphatidylinositol-3-phosphate binding GO:0034045; cellular_component; phagophore assembly site membrane GO:0034497; biological_process; protein localization to phagophore assembly site GO:0044804; biological_process; autophagy of nucleus GO:0080025; molecular_function; phosphatidylinositol-3, 5-bisphosphate binding
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0356720.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)