Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.5HG0353060

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0353060
Locus	HORVU.MOREX.r2.5HG0353060.1
URL	Gene Ontology GO:0001818 [ Show all 13 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 15 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: F-box protein GO:0001818; biological_process; negative regulation of cytokine production GO:0002088; biological_process; lens development in camera-type eye GO:0003674; molecular_function; molecular_function GO:0005212; molecular_function; structural constituent of eye lens GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0007601; biological_process; visual perception GO:0014067; biological_process; negative regulation of phosphatidylinositol 3-kinase signaling GO:0032007; biological_process; negative regulation of TOR signaling GO:0051898; biological_process; negative regulation of protein kinase B signaling GO:0070373; biological_process; negative regulation of ERK1 and ERK2 cascade GO:2000210; biological_process; positive regulation of anoikis
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0353060.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)