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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0350480

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0350480
Locus	HORVU.MOREX.r2.5HG0350480.1
URL	Gene Ontology GO:0000226 [ Show all 50 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 52 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: zinc transporter 5 precursor GO:0000226; biological_process; microtubule cytoskeleton organization GO:0001578; biological_process; microtubule bundle formation GO:0003779; molecular_function; actin binding GO:0005515; molecular_function; protein binding GO:0005543; molecular_function; phospholipid binding GO:0005737; cellular_component; cytoplasm GO:0005856; cellular_component; cytoskeleton GO:0005874; cellular_component; microtubule GO:0005875; cellular_component; microtubule associated complex GO:0005886; cellular_component; plasma membrane GO:0007026; biological_process; negative regulation of microtubule depolymerization GO:0007399; biological_process; nervous system development GO:0007416; biological_process; synapse assembly GO:0008017; molecular_function; microtubule binding GO:0009611; biological_process; response to wounding GO:0009612; biological_process; response to mechanical stimulus GO:0009743; biological_process; response to carbohydrate GO:0010035; biological_process; response to inorganic substance GO:0014012; biological_process; peripheral nervous system axon regeneration GO:0014069; cellular_component; postsynaptic density GO:0017085; biological_process; response to insecticide GO:0021700; biological_process; developmental maturation GO:0030054; cellular_component; cell junction GO:0030424; cellular_component; axon GO:0030425; cellular_component; dendrite GO:0030426; cellular_component; growth cone GO:0031116; biological_process; positive regulation of microtubule polymerization GO:0031667; biological_process; response to nutrient levels GO:0032355; biological_process; response to estradiol GO:0033189; biological_process; response to vitamin A GO:0036477; cellular_component; somatodendritic compartment GO:0042493; biological_process; response to drug GO:0042995; cellular_component; cell projection GO:0043025; cellular_component; neuronal cell body GO:0043196; cellular_component; varicosity GO:0043197; cellular_component; dendritic spine GO:0043204; cellular_component; perikaryon GO:0044877; molecular_function; protein-containing complex binding GO:0045202; cellular_component; synapse GO:0045666; biological_process; positive regulation of neuron differentiation GO:0045773; biological_process; positive regulation of axon extension GO:0048471; cellular_component; perinuclear region of cytoplasm GO:0048666; biological_process; neuron development GO:0048678; biological_process; response to axon injury GO:0051915; biological_process; induction of synaptic plasticity by chemical substance GO:0071363; biological_process; cellular response to growth factor stimulus GO:0071375; biological_process; cellular response to peptide hormone stimulus GO:0097440; cellular_component; apical dendrite GO:0097441; cellular_component; basal dendrite GO:0097457; cellular_component; hippocampal mossy fiber
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0350480.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)