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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0342760

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Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.


Probe
HORVU.MOREX.r2.4HG0342760
Locus
HORVU.MOREX.r2.4HG0342760.1
URL
Gene Ontology GO:0005216
[ Show all 44 ]
Reference
ReferenceMonat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks
[ Hide all but 1 of 46 ]
Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database).
Functional annotation published with the genome: Splicing factor u2af large subunit, putative
GO:0005216; molecular_function; ion channel activity
GO:0005220; molecular_function; inositol 1, 4, 5-trisphosphate-sensitive calcium-release channel activity
GO:0005262; molecular_function; calcium channel activity
GO:0005509; molecular_function; calcium ion binding
GO:0005515; molecular_function; protein binding
GO:0005635; cellular_component; nuclear envelope
GO:0005737; cellular_component; cytoplasm
GO:0005783; cellular_component; endoplasmic reticulum
GO:0005789; cellular_component; endoplasmic reticulum membrane
GO:0005886; cellular_component; plasma membrane
GO:0006811; biological_process; ion transport
GO:0006816; biological_process; calcium ion transport
GO:0006915; biological_process; apoptotic process
GO:0007204; biological_process; positive regulation of cytosolic calcium ion concentration
GO:0008022; molecular_function; protein C-terminus binding
GO:0014069; cellular_component; postsynaptic density
GO:0015278; molecular_function; calcium-release channel activity
GO:0016020; cellular_component; membrane
GO:0016021; cellular_component; integral component of membrane
GO:0016529; cellular_component; sarcoplasmic reticulum
GO:0019903; molecular_function; protein phosphatase binding
GO:0030425; cellular_component; dendrite
GO:0030658; cellular_component; transport vesicle membrane
GO:0030667; cellular_component; secretory granule membrane
GO:0031410; cellular_component; cytoplasmic vesicle
GO:0032991; cellular_component; protein-containing complex
GO:0035091; molecular_function; phosphatidylinositol binding
GO:0042802; molecular_function; identical protein binding
GO:0043025; cellular_component; neuronal cell body
GO:0043231; cellular_component; intracellular membrane-bounded organelle
GO:0044877; molecular_function; protein-containing complex binding
GO:0045121; cellular_component; membrane raft
GO:0048016; biological_process; inositol phosphate-mediated signaling
GO:0048471; cellular_component; perinuclear region of cytoplasm
GO:0051209; biological_process; release of sequestered calcium ion into cytosol
GO:0051928; biological_process; positive regulation of calcium ion transport
GO:0055085; biological_process; transmembrane transport
GO:0070059; biological_process; intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress
GO:0070588; biological_process; calcium ion transmembrane transport
GO:0070679; molecular_function; inositol 1, 4, 5 trisphosphate binding
GO:0071320; biological_process; cellular response to cAMP
GO:0071456; biological_process; cellular response to hypoxia
GO:0097060; cellular_component; synaptic membrane
GO:1901215; biological_process; negative regulation of neuron death
Type
Genomic
Sequence
HORVU.MOREX.r2.4HG0342760.1
Source Species
Hordeum vulgare
Source Germplasm
Morex (barley)