Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.4HG0341330

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0341330
Locus	HORVU.MOREX.r2.4HG0341330.1
URL	Gene Ontology GO:0000139 [ Show all 34 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 36 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Anaerobic glycerol-3-phosphate dehydrogenase subunit B GO:0000139; cellular_component; Golgi membrane GO:0000166; molecular_function; nucleotide binding GO:0001891; cellular_component; phagocytic cup GO:0005524; molecular_function; ATP binding GO:0005768; cellular_component; endosome GO:0005794; cellular_component; Golgi apparatus GO:0005886; cellular_component; plasma membrane GO:0006869; biological_process; lipid transport GO:0006909; biological_process; phagocytosis GO:0007613; biological_process; memory GO:0009986; cellular_component; cell surface GO:0010008; cellular_component; endosome membrane GO:0010875; biological_process; positive regulation of cholesterol efflux GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016887; molecular_function; ATPase activity GO:0018149; biological_process; peptide cross-linking GO:0032587; cellular_component; ruffle membrane GO:0033344; biological_process; cholesterol efflux GO:0033700; biological_process; phospholipid efflux GO:0034188; molecular_function; apolipoprotein A-I receptor activity GO:0034380; biological_process; high-density lipoprotein particle assembly GO:0034504; biological_process; protein localization to nucleus GO:0038027; biological_process; apolipoprotein A-I-mediated signaling pathway GO:0042626; molecular_function; ATPase-coupled transmembrane transporter activity GO:0042985; biological_process; negative regulation of amyloid precursor protein biosynthetic process GO:0043231; cellular_component; intracellular membrane-bounded organelle GO:0050766; biological_process; positive regulation of phagocytosis GO:0055085; biological_process; transmembrane transport GO:0070374; biological_process; positive regulation of ERK1 and ERK2 cascade GO:1900223; biological_process; positive regulation of amyloid-beta clearance GO:1901076; biological_process; positive regulation of engulfment of apoptotic cell GO:1902430; biological_process; negative regulation of amyloid-beta formation GO:1902995; biological_process; positive regulation of phospholipid efflux
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0341330.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)