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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0338960

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0338960
Locus	HORVU.MOREX.r2.4HG0338960.1
URL	Gene Ontology GO:0000077 [ Show all 22 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 24 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: ArfGap/RecO-like zinc finger domain-containing protein GO:0000077; biological_process; DNA damage checkpoint GO:0004843; molecular_function; thiol-dependent ubiquitin-specific protease activity GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0006281; biological_process; DNA repair GO:0006508; biological_process; proteolysis GO:0006511; biological_process; ubiquitin-dependent protein catabolic process GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0007265; biological_process; Ras protein signal transduction GO:0008233; molecular_function; peptidase activity GO:0008234; molecular_function; cysteine-type peptidase activity GO:0008283; biological_process; cell population proliferation GO:0010212; biological_process; response to ionizing radiation GO:0016579; biological_process; protein deubiquitination GO:0016604; cellular_component; nuclear body GO:0016787; molecular_function; hydrolase activity GO:0031647; biological_process; regulation of protein stability GO:0032991; cellular_component; protein-containing complex GO:0034644; biological_process; cellular response to UV GO:0036459; molecular_function; thiol-dependent ubiquitinyl hydrolase activity GO:0042771; biological_process; intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0338960.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)