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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0336400

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0336400
Locus	HORVU.MOREX.r2.4HG0336400.1
URL	Gene Ontology GO:0001934 [ Show all 43 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 45 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: GRF zinc finger family protein GO:0001934; biological_process; positive regulation of protein phosphorylation GO:0004175; molecular_function; endopeptidase activity GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005643; cellular_component; nuclear pore GO:0005654; cellular_component; nucleoplasm GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0006508; biological_process; proteolysis GO:0007507; biological_process; heart development GO:0008233; molecular_function; peptidase activity GO:0008234; molecular_function; cysteine-type peptidase activity GO:0009950; biological_process; dorsal/ventral axis specification GO:0015031; biological_process; protein transport GO:0016020; cellular_component; membrane GO:0016055; biological_process; Wnt signaling pathway GO:0016604; cellular_component; nuclear body GO:0016605; cellular_component; PML body GO:0016787; molecular_function; hydrolase activity GO:0016925; biological_process; protein sumoylation GO:0016926; biological_process; protein desumoylation GO:0019904; molecular_function; protein domain specific binding GO:0030111; biological_process; regulation of Wnt signaling pathway GO:0031397; biological_process; negative regulation of protein ubiquitination GO:0031398; biological_process; positive regulation of protein ubiquitination GO:0031410; cellular_component; cytoplasmic vesicle GO:0031648; biological_process; protein destabilization GO:0031965; cellular_component; nuclear membrane GO:0032091; biological_process; negative regulation of protein binding GO:0032875; biological_process; regulation of DNA endoreduplication GO:0035562; biological_process; negative regulation of chromatin binding GO:0043518; biological_process; negative regulation of DNA damage response, signal transduction by p53 class mediator GO:0045444; biological_process; fat cell differentiation GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0051028; biological_process; mRNA transport GO:0051246; biological_process; regulation of protein metabolic process GO:0060707; biological_process; trophoblast giant cell differentiation GO:0060711; biological_process; labyrinthine layer development GO:0060712; biological_process; spongiotrophoblast layer development GO:0070139; molecular_function; SUMO-specific endopeptidase activity GO:0070140; molecular_function; SUMO-specific isopeptidase activity GO:1901797; biological_process; negative regulation of signal transduction by p53 class mediator GO:2000045; biological_process; regulation of G1/S transition of mitotic cell cycle
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0336400.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)