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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0328870

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0328870
Locus	HORVU.MOREX.r2.4HG0328870.1
URL	Gene Ontology GO:0000139 [ Show all 23 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 25 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Ataxia telangiectasia-mutated and RAD3-like protein GO:0000139; cellular_component; Golgi membrane GO:0000149; molecular_function; SNARE binding GO:0005484; molecular_function; SNAP receptor activity GO:0005515; molecular_function; protein binding GO:0005783; cellular_component; endoplasmic reticulum GO:0005794; cellular_component; Golgi apparatus GO:0005829; cellular_component; cytosol GO:0006886; biological_process; intracellular protein transport GO:0006888; biological_process; endoplasmic reticulum to Golgi vesicle-mediated transport GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016192; biological_process; vesicle-mediated transport GO:0031201; cellular_component; SNARE complex GO:0031982; cellular_component; vesicle GO:0033116; cellular_component; endoplasmic reticulum-Golgi intermediate compartment membrane GO:0034498; biological_process; early endosome to Golgi transport GO:0042147; biological_process; retrograde transport, endosome to Golgi GO:0045732; biological_process; positive regulation of protein catabolic process GO:0047485; molecular_function; protein N-terminus binding GO:0048278; biological_process; vesicle docking GO:0048280; biological_process; vesicle fusion with Golgi apparatus GO:0090166; biological_process; Golgi disassembly GO:1903358; biological_process; regulation of Golgi organization
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0328870.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)