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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0327770

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0327770
Locus	HORVU.MOREX.r2.4HG0327770.1
URL	Gene Ontology GO:0000287 [ Show all 21 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 23 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: DNA-directed RNA polymerase subunit beta GO:0000287; molecular_function; magnesium ion binding GO:0003677; molecular_function; DNA binding GO:0003824; molecular_function; catalytic activity GO:0004518; molecular_function; nuclease activity GO:0004519; molecular_function; endonuclease activity GO:0004527; molecular_function; exonuclease activity GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005730; cellular_component; nucleolus GO:0005739; cellular_component; mitochondrion GO:0006260; biological_process; DNA replication GO:0006281; biological_process; DNA repair GO:0006284; biological_process; base-excision repair GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0008409; molecular_function; 5'-3' exonuclease activity GO:0016787; molecular_function; hydrolase activity GO:0016788; molecular_function; hydrolase activity, acting on ester bonds GO:0017108; molecular_function; 5'-flap endonuclease activity GO:0043137; biological_process; DNA replication, removal of RNA primer GO:0046872; molecular_function; metal ion binding GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0327770.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)