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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0323920

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0323920
Locus	HORVU.MOREX.r2.4HG0323920.1
URL	Gene Ontology GO:0000122 [ Show all 53 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 55 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Heat-shock protein GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0005133; molecular_function; interferon-gamma receptor binding GO:0005515; molecular_function; protein binding GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005739; cellular_component; mitochondrion GO:0005759; cellular_component; mitochondrial matrix GO:0005829; cellular_component; cytosol GO:0005884; cellular_component; actin filament GO:0005886; cellular_component; plasma membrane GO:0006264; biological_process; mitochondrial DNA replication GO:0006457; biological_process; protein folding GO:0006469; biological_process; negative regulation of protein kinase activity GO:0006915; biological_process; apoptotic process GO:0006919; biological_process; activation of cysteine-type endopeptidase activity involved in apoptotic process GO:0006924; biological_process; activation-induced cell death of T cells GO:0007005; biological_process; mitochondrion organization GO:0007264; biological_process; small GTPase mediated signal transduction GO:0007528; biological_process; neuromuscular junction development GO:0007569; biological_process; cell aging GO:0008134; molecular_function; transcription factor binding GO:0008285; biological_process; negative regulation of cell population proliferation GO:0009408; biological_process; response to heat GO:0016020; cellular_component; membrane GO:0019897; cellular_component; extrinsic component of plasma membrane GO:0019901; molecular_function; protein kinase binding GO:0030054; cellular_component; cell junction GO:0030544; molecular_function; Hsp70 protein binding GO:0030695; molecular_function; GTPase regulator activity GO:0030971; molecular_function; receptor tyrosine kinase binding GO:0031072; molecular_function; heat shock protein binding GO:0031398; biological_process; positive regulation of protein ubiquitination GO:0031594; cellular_component; neuromuscular junction GO:0032088; biological_process; negative regulation of NF-kappaB transcription factor activity GO:0033077; biological_process; T cell differentiation in thymus GO:0034341; biological_process; response to interferon-gamma GO:0042102; biological_process; positive regulation of T cell proliferation GO:0042645; cellular_component; mitochondrial nucleoid GO:0043065; biological_process; positive regulation of apoptotic process GO:0043066; biological_process; negative regulation of apoptotic process GO:0043069; biological_process; negative regulation of programmed cell death GO:0043124; biological_process; negative regulation of I-kappaB kinase/NF-kappaB signaling GO:0043154; biological_process; negative regulation of cysteine-type endopeptidase activity involved in apoptotic process GO:0043231; cellular_component; intracellular membrane-bounded organelle GO:0045202; cellular_component; synapse GO:0045211; cellular_component; postsynaptic membrane GO:0046872; molecular_function; metal ion binding GO:0050821; biological_process; protein stabilization GO:0051059; molecular_function; NF-kappaB binding GO:0051082; molecular_function; unfolded protein binding GO:0060336; biological_process; negative regulation of interferon-gamma-mediated signaling pathway GO:0071340; biological_process; skeletal muscle acetylcholine-gated channel clustering
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0323920.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)