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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0315110

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0315110
Locus	HORVU.MOREX.r2.4HG0315110.1
URL	Gene Ontology GO:0000122 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 22 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: PRC-barrel domain protein GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0003677; molecular_function; DNA binding GO:0003682; molecular_function; chromatin binding GO:0003729; molecular_function; mRNA binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006357; biological_process; regulation of transcription by RNA polymerase II GO:0006368; biological_process; transcription elongation from RNA polymerase II promoter GO:0006397; biological_process; mRNA processing GO:0016239; biological_process; positive regulation of macroautophagy GO:0019899; molecular_function; enzyme binding GO:0032044; cellular_component; DSIF complex GO:0032784; biological_process; regulation of DNA-templated transcription, elongation GO:0032785; biological_process; negative regulation of DNA-templated transcription, elongation GO:0032786; biological_process; positive regulation of DNA-templated transcription, elongation GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046982; molecular_function; protein heterodimerization activity GO:1900364; biological_process; negative regulation of mRNA polyadenylation
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0315110.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)