Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.4HG0312900

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0312900
Locus	HORVU.MOREX.r2.4HG0312900.1
URL	Gene Ontology GO:0001530 [ Show all 38 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 40 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transcription factor jumonji domain protein GO:0001530; molecular_function; lipopolysaccharide binding GO:0003723; molecular_function; RNA binding GO:0003725; molecular_function; double-stranded RNA binding GO:0004518; molecular_function; nuclease activity GO:0004519; molecular_function; endonuclease activity GO:0004521; molecular_function; endoribonuclease activity GO:0004525; molecular_function; ribonuclease III activity GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005730; cellular_component; nucleolus GO:0006396; biological_process; RNA processing GO:0010468; biological_process; regulation of gene expression GO:0010586; biological_process; miRNA metabolic process GO:0010628; biological_process; positive regulation of gene expression GO:0014069; cellular_component; postsynaptic density GO:0016075; biological_process; rRNA catabolic process GO:0016787; molecular_function; hydrolase activity GO:0017151; molecular_function; DEAD/H-box RNA helicase binding GO:0030422; biological_process; production of siRNA involved in RNA interference GO:0031047; biological_process; gene silencing by RNA GO:0031053; biological_process; primary miRNA processing GO:0031054; biological_process; pre-miRNA processing GO:0042254; biological_process; ribosome biogenesis GO:0042803; molecular_function; protein homodimerization activity GO:0045589; biological_process; regulation of regulatory T cell differentiation GO:0046332; molecular_function; SMAD binding GO:0046872; molecular_function; metal ion binding GO:0050727; biological_process; regulation of inflammatory response GO:0050829; biological_process; defense response to Gram-negative bacterium GO:0050830; biological_process; defense response to Gram-positive bacterium GO:0070412; molecular_function; R-SMAD binding GO:0070877; cellular_component; microprocessor complex GO:0070878; molecular_function; primary miRNA binding GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis GO:0090501; biological_process; RNA phosphodiester bond hydrolysis GO:0090502; biological_process; RNA phosphodiester bond hydrolysis, endonucleolytic GO:2000628; biological_process; regulation of miRNA metabolic process
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0312900.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)