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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0283030

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0283030
Locus	HORVU.MOREX.r2.4HG0283030.1
URL	Gene Ontology GO:0000139 [ Show all 135 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 137 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: DNA binding protein GO:0000139; cellular_component; Golgi membrane GO:0000166; molecular_function; nucleotide binding GO:0001030; molecular_function; RNA polymerase III type 1 promoter DNA binding GO:0001031; molecular_function; RNA polymerase III type 2 promoter DNA binding GO:0001032; molecular_function; RNA polymerase III type 3 promoter DNA binding GO:0001156; molecular_function; TFIIIC-class transcription factor complex binding GO:0001558; biological_process; regulation of cell growth GO:0001932; biological_process; regulation of protein phosphorylation GO:0001933; biological_process; negative regulation of protein phosphorylation GO:0001934; biological_process; positive regulation of protein phosphorylation GO:0001938; biological_process; positive regulation of endothelial cell proliferation GO:0003007; biological_process; heart morphogenesis GO:0003179; biological_process; heart valve morphogenesis GO:0004672; molecular_function; protein kinase activity GO:0004674; molecular_function; protein serine/threonine kinase activity GO:0005515; molecular_function; protein binding GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005739; cellular_component; mitochondrion GO:0005741; cellular_component; mitochondrial outer membrane GO:0005764; cellular_component; lysosome GO:0005783; cellular_component; endoplasmic reticulum GO:0005789; cellular_component; endoplasmic reticulum membrane GO:0005794; cellular_component; Golgi apparatus GO:0005829; cellular_component; cytosol GO:0005979; biological_process; regulation of glycogen biosynthetic process GO:0006109; biological_process; regulation of carbohydrate metabolic process GO:0006112; biological_process; energy reserve metabolic process GO:0006207; biological_process; de novo' pyrimidine nucleobase biosynthetic process GO:0006281; biological_process; DNA repair GO:0006468; biological_process; protein phosphorylation GO:0007281; biological_process; germ cell development GO:0007420; biological_process; brain development GO:0007569; biological_process; cell aging GO:0007584; biological_process; response to nutrient GO:0007616; biological_process; long-term memory GO:0008361; biological_process; regulation of cell size GO:0008542; biological_process; visual learning GO:0009267; biological_process; cellular response to starvation GO:0009791; biological_process; post-embryonic development GO:0010507; biological_process; negative regulation of autophagy GO:0010592; biological_process; positive regulation of lamellipodium assembly GO:0010628; biological_process; positive regulation of gene expression GO:0010718; biological_process; positive regulation of epithelial to mesenchymal transition GO:0010831; biological_process; positive regulation of myotube differentiation GO:0010942; biological_process; positive regulation of cell death GO:0010976; biological_process; positive regulation of neuron projection development GO:0012505; cellular_component; endomembrane system GO:0014042; biological_process; positive regulation of neuron maturation GO:0014736; biological_process; negative regulation of muscle atrophy GO:0014823; biological_process; response to activity GO:0016020; cellular_component; membrane GO:0016242; biological_process; negative regulation of macroautophagy GO:0016301; molecular_function; kinase activity GO:0016310; biological_process; phosphorylation GO:0016605; cellular_component; PML body GO:0016740; molecular_function; transferase activity GO:0018105; biological_process; peptidyl-serine phosphorylation GO:0018107; biological_process; peptidyl-threonine phosphorylation GO:0019901; molecular_function; protein kinase binding GO:0019904; molecular_function; protein domain specific binding GO:0021510; biological_process; spinal cord development GO:0030030; biological_process; cell projection organization GO:0030425; cellular_component; dendrite GO:0030838; biological_process; positive regulation of actin filament polymerization GO:0031397; biological_process; negative regulation of protein ubiquitination GO:0031529; biological_process; ruffle organization GO:0031641; biological_process; regulation of myelination GO:0031669; biological_process; cellular response to nutrient levels GO:0031929; biological_process; TOR signaling GO:0031931; cellular_component; TORC1 complex GO:0031932; cellular_component; TORC2 complex GO:0031998; biological_process; regulation of fatty acid beta-oxidation GO:0032095; biological_process; regulation of response to food GO:0032868; biological_process; response to insulin GO:0032956; biological_process; regulation of actin cytoskeleton organization GO:0032991; cellular_component; protein-containing complex GO:0034198; biological_process; cellular response to amino acid starvation GO:0035176; biological_process; social behavior GO:0035264; biological_process; multicellular organism growth GO:0038202; biological_process; TORC1 signaling GO:0042060; biological_process; wound healing GO:0042220; biological_process; response to cocaine GO:0042802; molecular_function; identical protein binding GO:0043022; molecular_function; ribosome binding GO:0043087; biological_process; regulation of GTPase activity GO:0043200; biological_process; response to amino acid GO:0043278; biological_process; response to morphine GO:0043610; biological_process; regulation of carbohydrate utilization GO:0044877; molecular_function; protein-containing complex binding GO:0045429; biological_process; positive regulation of nitric oxide biosynthetic process GO:0045670; biological_process; regulation of osteoclast differentiation GO:0045727; biological_process; positive regulation of translation GO:0045792; biological_process; negative regulation of cell size GO:0045859; biological_process; regulation of protein kinase activity GO:0045945; biological_process; positive regulation of transcription by RNA polymerase III GO:0046777; biological_process; protein autophosphorylation GO:0046889; biological_process; positive regulation of lipid biosynthetic process GO:0048255; biological_process; mRNA stabilization GO:0048661; biological_process; positive regulation of smooth muscle cell proliferation GO:0048714; biological_process; positive regulation of oligodendrocyte differentiation GO:0048738; biological_process; cardiac muscle tissue development GO:0050731; biological_process; positive regulation of peptidyl-tyrosine phosphorylation GO:0050769; biological_process; positive regulation of neurogenesis GO:0050882; biological_process; voluntary musculoskeletal movement GO:0051219; molecular_function; phosphoprotein binding GO:0051496; biological_process; positive regulation of stress fiber assembly GO:0051549; biological_process; positive regulation of keratinocyte migration GO:0051896; biological_process; regulation of protein kinase B signaling GO:0051897; biological_process; positive regulation of protein kinase B signaling GO:0055006; biological_process; cardiac cell development GO:0055013; biological_process; cardiac muscle cell development GO:0060048; biological_process; cardiac muscle contraction GO:0060135; biological_process; maternal process involved in female pregnancy GO:0060252; biological_process; positive regulation of glial cell proliferation GO:0060999; biological_process; positive regulation of dendritic spine development GO:0061051; biological_process; positive regulation of cell growth involved in cardiac muscle cell development GO:0070885; biological_process; negative regulation of calcineurin-NFAT signaling cascade GO:0071230; biological_process; cellular response to amino acid stimulus GO:0071233; biological_process; cellular response to leucine GO:0071456; biological_process; cellular response to hypoxia GO:0090335; biological_process; regulation of brown fat cell differentiation GO:0090559; biological_process; regulation of membrane permeability GO:1901216; biological_process; positive regulation of neuron death GO:1901838; biological_process; positive regulation of transcription of nucleolar large rRNA by RNA polymerase I GO:1903691; biological_process; positive regulation of wound healing, spreading of epidermal cells GO:1904000; biological_process; positive regulation of eating behavior GO:1904056; biological_process; positive regulation of cholangiocyte proliferation GO:1904058; biological_process; positive regulation of sensory perception of pain GO:1904193; biological_process; negative regulation of cholangiocyte apoptotic process GO:1904197; biological_process; positive regulation of granulosa cell proliferation GO:1904206; biological_process; positive regulation of skeletal muscle hypertrophy GO:1904213; biological_process; negative regulation of iodide transmembrane transport GO:1990253; biological_process; cellular response to leucine starvation
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0283030.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)