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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0278630

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0278630
Locus	HORVU.MOREX.r2.4HG0278630.1
URL	Gene Ontology GO:0000122 [ Show all 37 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 39 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: MADS-box transcription factor GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0000978; molecular_function; RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981; molecular_function; DNA-binding transcription factor activity, RNA polymerase II-specific GO:0001162; molecular_function; RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding GO:0003682; molecular_function; chromatin binding GO:0003713; molecular_function; transcription coactivator activity GO:0005102; molecular_function; signaling receptor binding GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005737; cellular_component; cytoplasm GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0007623; biological_process; circadian rhythm GO:0008134; molecular_function; transcription factor binding GO:0010468; biological_process; regulation of gene expression GO:0010906; biological_process; regulation of glucose metabolic process GO:0015721; biological_process; bile acid and bile salt transport GO:0016604; cellular_component; nuclear body GO:0016922; molecular_function; nuclear receptor binding GO:0017162; molecular_function; aryl hydrocarbon receptor binding GO:0019216; biological_process; regulation of lipid metabolic process GO:0019904; molecular_function; protein domain specific binding GO:0030374; molecular_function; nuclear receptor transcription coactivator activity GO:0030375; molecular_function; thyroid hormone receptor coactivator activity GO:0030522; biological_process; intracellular receptor signaling pathway GO:0032570; biological_process; response to progesterone GO:0032870; biological_process; cellular response to hormone stimulus GO:0032922; biological_process; circadian regulation of gene expression GO:0032991; cellular_component; protein-containing complex GO:0035257; molecular_function; nuclear hormone receptor binding GO:0045475; biological_process; locomotor rhythm GO:0045892; biological_process; negative regulation of transcription, DNA-templated GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046983; molecular_function; protein dimerization activity GO:0048511; biological_process; rhythmic process GO:1904017; biological_process; cellular response to Thyroglobulin triiodothyronine
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0278630.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)