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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0273320

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0273320
Locus	HORVU.MOREX.r2.3HG0273320.1
URL	Gene Ontology GO:0003705 [ Show all 49 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 52 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transcription initiation factor IIA subunit 2 The GO term GO:0003705 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0000981 GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0001714; biological_process; endodermal cell fate specification GO:0001822; biological_process; kidney development GO:0001826; biological_process; inner cell mass cell differentiation GO:0001889; biological_process; liver development GO:0003677; molecular_function; DNA binding GO:0003700; molecular_function; DNA-binding transcription factor activity GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005667; cellular_component; transcription factor complex GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0007219; biological_process; Notch signaling pathway GO:0007492; biological_process; endoderm development GO:0009749; biological_process; response to glucose GO:0009952; biological_process; anterior/posterior pattern specification GO:0010628; biological_process; positive regulation of gene expression GO:0030073; biological_process; insulin secretion GO:0030111; biological_process; regulation of Wnt signaling pathway GO:0030902; biological_process; hindbrain development GO:0031018; biological_process; endocrine pancreas development GO:0035565; biological_process; regulation of pronephros size GO:0039020; biological_process; pronephric nephron tubule development GO:0042663; biological_process; regulation of endodermal cell fate specification GO:0042803; molecular_function; protein homodimerization activity GO:0043066; biological_process; negative regulation of apoptotic process GO:0044212; molecular_function; transcription regulatory region DNA binding GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046982; molecular_function; protein heterodimerization activity GO:0048557; biological_process; embryonic digestive tract morphogenesis GO:0048754; biological_process; branching morphogenesis of an epithelial tube GO:0048793; biological_process; pronephros development GO:0048806; biological_process; genitalia development GO:0050673; biological_process; epithelial cell proliferation GO:0060261; biological_process; positive regulation of transcription initiation from RNA polymerase II promoter GO:0060429; biological_process; epithelium development GO:0060677; biological_process; ureteric bud elongation GO:0060993; biological_process; kidney morphogenesis GO:0061017; biological_process; hepatoblast differentiation GO:0061296; biological_process; negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis GO:0072095; biological_process; regulation of branch elongation involved in ureteric bud branching GO:0072164; biological_process; mesonephric tubule development GO:0072176; biological_process; nephric duct development GO:0072177; biological_process; mesonephric duct development GO:0072179; biological_process; nephric duct formation GO:0072181; biological_process; mesonephric duct formation GO:1900212; biological_process; negative regulation of mesenchymal cell apoptotic process involved in metanephros development
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0273320.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)