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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0258140

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0258140
Locus	HORVU.MOREX.r2.3HG0258140.1
URL	Gene Ontology GO:0000166 [ Show all 8 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 10 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein GO:0000166; molecular_function; nucleotide binding GO:0005524; molecular_function; ATP binding GO:0005525; molecular_function; GTP binding GO:0005737; cellular_component; cytoplasm GO:0016787; molecular_function; hydrolase activity GO:0016887; molecular_function; ATPase activity GO:0043022; molecular_function; ribosome binding GO:0043023; molecular_function; ribosomal large subunit binding
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0258140.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)