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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0257660

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0257660
Locus	HORVU.MOREX.r2.3HG0257660.1
URL	Gene Ontology GO:0003676 [ Show all 17 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 19 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: SAUR-like auxin-responsive protein family GO:0003676; molecular_function; nucleic acid binding GO:0003723; molecular_function; RNA binding GO:0003725; molecular_function; double-stranded RNA binding GO:0004525; molecular_function; ribonuclease III activity GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005730; cellular_component; nucleolus GO:0006396; biological_process; RNA processing GO:0010216; biological_process; maintenance of DNA methylation GO:0010267; biological_process; production of ta-siRNAs involved in RNA interference GO:0016891; molecular_function; endoribonuclease activity, producing 5'-phosphomonoesters GO:0030422; biological_process; production of siRNA involved in RNA interference GO:0031047; biological_process; gene silencing by RNA GO:0051214; biological_process; RNA virus induced gene silencing GO:0051607; biological_process; defense response to virus GO:0090501; biological_process; RNA phosphodiester bond hydrolysis GO:0090502; biological_process; RNA phosphodiester bond hydrolysis, endonucleolytic
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0257660.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)