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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0253630

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0253630
Locus	HORVU.MOREX.r2.3HG0253630.1
URL	Gene Ontology GO:0001786 [ Show all 19 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 21 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: 2-oxoglutarate-dependent dioxygenase GO:0001786; molecular_function; phosphatidylserine binding GO:0002102; cellular_component; podosome GO:0005096; molecular_function; GTPase activator activity GO:0005515; molecular_function; protein binding GO:0005546; molecular_function; phosphatidylinositol-4, 5-bisphosphate binding GO:0005547; molecular_function; phosphatidylinositol-3, 4, 5-trisphosphate binding GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0016020; cellular_component; membrane GO:0030030; biological_process; cell projection organization GO:0031253; cellular_component; cell projection membrane GO:0043197; cellular_component; dendritic spine GO:0043547; biological_process; positive regulation of GTPase activity GO:0045296; molecular_function; cadherin binding GO:0046872; molecular_function; metal ion binding GO:0060271; biological_process; cilium assembly GO:0061000; biological_process; negative regulation of dendritic spine development GO:0071803; biological_process; positive regulation of podosome assembly GO:1903527; biological_process; positive regulation of membrane tubulation
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0253630.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)