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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0248780

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0248780
Locus	HORVU.MOREX.r2.3HG0248780.1
URL	Gene Ontology GO:0001508 [ Show all 67 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 69 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Serine hydroxymethyltransferase GO:0001508; biological_process; action potential GO:0001661; biological_process; conditioned taste aversion GO:0001666; biological_process; response to hypoxia GO:0004888; molecular_function; transmembrane signaling receptor activity GO:0005216; molecular_function; ion channel activity GO:0005230; molecular_function; extracellular ligand-gated ion channel activity GO:0005515; molecular_function; protein binding GO:0005886; cellular_component; plasma membrane GO:0005892; cellular_component; acetylcholine-gated channel complex GO:0006811; biological_process; ion transport GO:0006816; biological_process; calcium ion transport GO:0006939; biological_process; smooth muscle contraction GO:0007165; biological_process; signal transduction GO:0007271; biological_process; synaptic transmission, cholinergic GO:0007601; biological_process; visual perception GO:0007605; biological_process; sensory perception of sound GO:0007612; biological_process; learning GO:0007613; biological_process; memory GO:0007626; biological_process; locomotory behavior GO:0008144; molecular_function; drug binding GO:0008306; biological_process; associative learning GO:0008542; biological_process; visual learning GO:0009897; cellular_component; external side of plasma membrane GO:0014059; biological_process; regulation of dopamine secretion GO:0015464; molecular_function; acetylcholine receptor activity GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0019233; biological_process; sensory perception of pain GO:0021562; biological_process; vestibulocochlear nerve development GO:0021631; biological_process; optic nerve morphogenesis GO:0021771; biological_process; lateral geniculate nucleus development GO:0021952; biological_process; central nervous system projection neuron axonogenesis GO:0021955; biological_process; central nervous system neuron axonogenesis GO:0022848; molecular_function; acetylcholine-gated cation-selective channel activity GO:0030054; cellular_component; cell junction GO:0030890; biological_process; positive regulation of B cell proliferation GO:0032225; biological_process; regulation of synaptic transmission, dopaminergic GO:0032226; biological_process; positive regulation of synaptic transmission, dopaminergic GO:0033603; biological_process; positive regulation of dopamine secretion GO:0034220; biological_process; ion transmembrane transport GO:0035094; biological_process; response to nicotine GO:0035095; biological_process; behavioral response to nicotine GO:0035176; biological_process; social behavior GO:0042053; biological_process; regulation of dopamine metabolic process GO:0042113; biological_process; B cell activation GO:0042166; molecular_function; acetylcholine binding GO:0042220; biological_process; response to cocaine GO:0042320; biological_process; regulation of circadian sleep/wake cycle, REM sleep GO:0042391; biological_process; regulation of membrane potential GO:0044853; cellular_component; plasma membrane raft GO:0045188; biological_process; regulation of circadian sleep/wake cycle, non-REM sleep GO:0045202; cellular_component; synapse GO:0045211; cellular_component; postsynaptic membrane GO:0045471; biological_process; response to ethanol GO:0045759; biological_process; negative regulation of action potential GO:0046982; molecular_function; protein heterodimerization activity GO:0048814; biological_process; regulation of dendrite morphogenesis GO:0050877; biological_process; nervous system process GO:0050890; biological_process; cognition GO:0051291; biological_process; protein heterooligomerization GO:0051899; biological_process; membrane depolarization GO:0051963; biological_process; regulation of synapse assembly GO:0060078; biological_process; regulation of postsynaptic membrane potential GO:0060079; biological_process; excitatory postsynaptic potential GO:0060084; biological_process; synaptic transmission involved in micturition GO:0095500; biological_process; acetylcholine receptor signaling pathway GO:1905144; biological_process; response to acetylcholine
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0248780.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)