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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0247600

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0247600
Locus	HORVU.MOREX.r2.3HG0247600.1
URL	Gene Ontology GO:0001105 [ Show all 39 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 42 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Retrotransposon protein, putative, unclassified GO:0003713; molecular_function; transcription coactivator activity The GO term GO:0001105 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003713 GO:0000776; cellular_component; kinetochore GO:0000973; biological_process; posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery GO:0003723; molecular_function; RNA binding GO:0003729; molecular_function; mRNA binding GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005635; cellular_component; nuclear envelope GO:0005643; cellular_component; nuclear pore GO:0005654; cellular_component; nucleoplasm GO:0006260; biological_process; DNA replication GO:0006366; biological_process; transcription by RNA polymerase II GO:0006405; biological_process; RNA export from nucleus GO:0006508; biological_process; proteolysis GO:0006606; biological_process; protein import into nucleus GO:0006913; biological_process; nucleocytoplasmic transport GO:0008139; molecular_function; nuclear localization sequence binding GO:0008233; molecular_function; peptidase activity GO:0008236; molecular_function; serine-type peptidase activity GO:0015031; biological_process; protein transport GO:0016020; cellular_component; membrane GO:0016604; cellular_component; nuclear body GO:0016787; molecular_function; hydrolase activity GO:0017056; molecular_function; structural constituent of nuclear pore GO:0031080; cellular_component; nuclear pore outer ring GO:0031965; cellular_component; nuclear membrane GO:0034398; biological_process; telomere tethering at nuclear periphery GO:0034399; cellular_component; nuclear periphery GO:0042277; molecular_function; peptide binding GO:0042405; cellular_component; nuclear inclusion body GO:0043231; cellular_component; intracellular membrane-bounded organelle GO:0044614; cellular_component; nuclear pore cytoplasmic filaments GO:0044615; cellular_component; nuclear pore nuclear basket GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0048026; biological_process; positive regulation of mRNA splicing, via spliceosome GO:0051028; biological_process; mRNA transport GO:0051292; biological_process; nuclear pore complex assembly GO:1990841; molecular_function; promoter-specific chromatin binding GO:1990904; cellular_component; ribonucleoprotein complex
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0247600.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)