Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.3HG0245410

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0245410
Locus	HORVU.MOREX.r2.3HG0245410.1
URL	Gene Ontology GO:0003677 [ Show all 27 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 29 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Ethylene-responsive transcription factor, putative GO:0003677; molecular_function; DNA binding GO:0003700; molecular_function; DNA-binding transcription factor activity GO:0005634; cellular_component; nucleus GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0009409; biological_process; response to cold GO:0009414; biological_process; response to water deprivation GO:0009611; biological_process; response to wounding GO:0009625; biological_process; response to insect GO:0009651; biological_process; response to salt stress GO:0009723; biological_process; response to ethylene GO:0009733; biological_process; response to auxin GO:0009735; biological_process; response to cytokinin GO:0009737; biological_process; response to abscisic acid GO:0009751; biological_process; response to salicylic acid GO:0009753; biological_process; response to jasmonic acid GO:0010311; biological_process; lateral root formation GO:0010337; biological_process; regulation of salicylic acid metabolic process GO:0010364; biological_process; regulation of ethylene biosynthetic process GO:0010728; biological_process; regulation of hydrogen peroxide biosynthetic process GO:0043565; molecular_function; sequence-specific DNA binding GO:0044212; molecular_function; transcription regulatory region DNA binding GO:0045892; biological_process; negative regulation of transcription, DNA-templated GO:0080027; biological_process; response to herbivore GO:0080113; biological_process; regulation of seed growth GO:0080141; biological_process; regulation of jasmonic acid biosynthetic process GO:2000068; biological_process; regulation of defense response to insect
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0245410.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)