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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0243800

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0243800
Locus	HORVU.MOREX.r2.3HG0243800.1
URL	Gene Ontology GO:0004003 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 23 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase GO:0003678; molecular_function; DNA helicase activity The GO term GO:0004003 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003678 GO:0000438; cellular_component; core TFIIH complex portion of holo TFIIH complex GO:0000439; cellular_component; transcription factor TFIIH core complex GO:0003690; molecular_function; double-stranded DNA binding GO:0003700; molecular_function; DNA-binding transcription factor activity GO:0004672; molecular_function; protein kinase activity GO:0005634; cellular_component; nucleus GO:0005669; cellular_component; transcription factor TFIID complex GO:0005675; cellular_component; transcription factor TFIIH holo complex GO:0006281; biological_process; DNA repair GO:0006289; biological_process; nucleotide-excision repair GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006366; biological_process; transcription by RNA polymerase II GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0008094; molecular_function; DNA-dependent ATPase activity GO:0008353; molecular_function; RNA polymerase II CTD heptapeptide repeat kinase activity GO:0016607; cellular_component; nuclear speck GO:0032508; biological_process; DNA duplex unwinding GO:0070816; biological_process; phosphorylation of RNA polymerase II C-terminal domain
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0243800.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)