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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0224100

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0224100
Locus	HORVU.MOREX.r2.3HG0224100.1
URL	Gene Ontology GO:0000976 [ Show all 29 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 31 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Six-bladed beta-propeller, TolB-like protein GO:0000976; molecular_function; transcription regulatory region sequence-specific DNA binding GO:0000977; molecular_function; RNA polymerase II regulatory region sequence-specific DNA binding GO:0001085; molecular_function; RNA polymerase II transcription factor binding GO:0001228; molecular_function; DNA-binding transcription activator activity, RNA polymerase II-specific GO:0003677; molecular_function; DNA binding GO:0003682; molecular_function; chromatin binding GO:0003700; molecular_function; DNA-binding transcription factor activity GO:0005634; cellular_component; nucleus GO:0005667; cellular_component; transcription factor complex GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006366; biological_process; transcription by RNA polymerase II GO:0008270; molecular_function; zinc ion binding GO:0008284; biological_process; positive regulation of cell population proliferation GO:0008543; biological_process; fibroblast growth factor receptor signaling pathway GO:0021514; biological_process; ventral spinal cord interneuron differentiation GO:0031101; biological_process; fin regeneration GO:0042246; biological_process; tissue regeneration GO:0043049; biological_process; otic placode formation GO:0043565; molecular_function; sequence-specific DNA binding GO:0045582; biological_process; positive regulation of T cell differentiation GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046872; molecular_function; metal ion binding GO:0048702; biological_process; embryonic neurocranium morphogenesis GO:0050769; biological_process; positive regulation of neurogenesis GO:0060788; biological_process; ectodermal placode formation GO:0061026; biological_process; cardiac muscle tissue regeneration GO:0071696; biological_process; ectodermal placode development GO:2001224; biological_process; positive regulation of neuron migration
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0224100.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)