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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0222860

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0222860
Locus	HORVU.MOREX.r2.3HG0222860.1
URL	Gene Ontology GO:0000166 [ Show all 36 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 38 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transposase GO:0000166; molecular_function; nucleotide binding GO:0005254; molecular_function; chloride channel activity GO:0005260; molecular_function; intracellularly ATP-gated chloride channel activity GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005768; cellular_component; endosome GO:0005769; cellular_component; early endosome GO:0005783; cellular_component; endoplasmic reticulum GO:0005789; cellular_component; endoplasmic reticulum membrane GO:0005829; cellular_component; cytosol GO:0005886; cellular_component; plasma membrane GO:0005887; cellular_component; integral component of plasma membrane GO:0006811; biological_process; ion transport GO:0006821; biological_process; chloride transport GO:0015106; molecular_function; bicarbonate transmembrane transporter activity GO:0015108; molecular_function; chloride transmembrane transporter activity GO:0015701; biological_process; bicarbonate transport GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016324; cellular_component; apical plasma membrane GO:0016787; molecular_function; hydrolase activity GO:0016887; molecular_function; ATPase activity GO:0019869; molecular_function; chloride channel inhibitor activity GO:0031901; cellular_component; early endosome membrane GO:0034707; cellular_component; chloride channel complex GO:0035377; biological_process; transepithelial water transport GO:0042626; molecular_function; ATPase-coupled transmembrane transporter activity GO:0048240; biological_process; sperm capacitation GO:0050891; biological_process; multicellular organismal water homeostasis GO:0051454; biological_process; intracellular pH elevation GO:0055038; cellular_component; recycling endosome membrane GO:0055085; biological_process; transmembrane transport GO:0060081; biological_process; membrane hyperpolarization GO:0071320; biological_process; cellular response to cAMP GO:1902476; biological_process; chloride transmembrane transport GO:1904322; biological_process; cellular response to forskolin
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0222860.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)