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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0199610

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0199610
Locus	HORVU.MOREX.r2.3HG0199610.1
URL	Gene Ontology GO:0000139 [ Show all 59 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 61 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: tRNA (Guanine(10)-N2)-methyltransferase-like protein GO:0000139; cellular_component; Golgi membrane GO:0000166; molecular_function; nucleotide binding GO:0001934; biological_process; positive regulation of protein phosphorylation GO:0002551; biological_process; mast cell chemotaxis GO:0003924; molecular_function; GTPase activity GO:0005515; molecular_function; protein binding GO:0005525; molecular_function; GTP binding GO:0005622; cellular_component; intracellular GO:0005737; cellular_component; cytoplasm GO:0005802; cellular_component; trans-Golgi network GO:0005829; cellular_component; cytosol GO:0005884; cellular_component; actin filament GO:0005886; cellular_component; plasma membrane GO:0006935; biological_process; chemotaxis GO:0007015; biological_process; actin filament organization GO:0007264; biological_process; small GTPase mediated signal transduction GO:0008283; biological_process; cell population proliferation GO:0008361; biological_process; regulation of cell size GO:0010591; biological_process; regulation of lamellipodium assembly GO:0010592; biological_process; positive regulation of lamellipodium assembly GO:0010811; biological_process; positive regulation of cell-substrate adhesion GO:0016020; cellular_component; membrane GO:0016601; biological_process; Rac protein signal transduction GO:0017137; molecular_function; Rab GTPase binding GO:0019899; molecular_function; enzyme binding GO:0019901; molecular_function; protein kinase binding GO:0030027; cellular_component; lamellipodium GO:0030032; biological_process; lamellipodium assembly GO:0030036; biological_process; actin cytoskeleton organization GO:0030334; biological_process; regulation of cell migration GO:0030900; biological_process; forebrain development GO:0031116; biological_process; positive regulation of microtubule polymerization GO:0031410; cellular_component; cytoplasmic vesicle GO:0031529; biological_process; ruffle organization GO:0031996; molecular_function; thioesterase binding GO:0032587; cellular_component; ruffle membrane GO:0032707; biological_process; negative regulation of interleukin-23 production GO:0034446; biological_process; substrate adhesion-dependent cell spreading GO:0036464; cellular_component; cytoplasmic ribonucleoprotein granule GO:0042470; cellular_component; melanosome GO:0042826; molecular_function; histone deacetylase binding GO:0043197; cellular_component; dendritic spine GO:0045453; biological_process; bone resorption GO:0045740; biological_process; positive regulation of DNA replication GO:0048012; biological_process; hepatocyte growth factor receptor signaling pathway GO:0048870; biological_process; cell motility GO:0051022; molecular_function; Rho GDP-dissociation inhibitor binding GO:0051117; molecular_function; ATPase binding GO:0051492; biological_process; regulation of stress fiber assembly GO:0051496; biological_process; positive regulation of stress fiber assembly GO:0051668; biological_process; localization within membrane GO:0051894; biological_process; positive regulation of focal adhesion assembly GO:0055038; cellular_component; recycling endosome membrane GO:0060263; biological_process; regulation of respiratory burst GO:0071260; biological_process; cellular response to mechanical stimulus GO:0071526; biological_process; semaphorin-plexin signaling pathway GO:0090023; biological_process; positive regulation of neutrophil chemotaxis GO:0097178; biological_process; ruffle assembly GO:1900026; biological_process; positive regulation of substrate adhesion-dependent cell spreading
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0199610.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)