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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0182300

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0182300
Locus	HORVU.MOREX.r2.3HG0182300.1
URL	Gene Ontology GO:0000122 [ Show all 26 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 28 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Serine/threonine protein phosphatase 7 long form isogeny GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0001833; biological_process; inner cell mass cell proliferation GO:0003677; molecular_function; DNA binding GO:0003682; molecular_function; chromatin binding GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005694; cellular_component; chromosome GO:0005829; cellular_component; cytosol GO:0005886; cellular_component; plasma membrane GO:0006325; biological_process; chromatin organization GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0007265; biological_process; Ras protein signal transduction GO:0008168; molecular_function; methyltransferase activity GO:0008270; molecular_function; zinc ion binding GO:0016740; molecular_function; transferase activity GO:0018024; molecular_function; histone-lysine N-methyltransferase activity GO:0032259; biological_process; methylation GO:0034968; biological_process; histone lysine methylation GO:0036124; biological_process; histone H3-K9 trimethylation GO:0043231; cellular_component; intracellular membrane-bounded organelle GO:0046872; molecular_function; metal ion binding GO:0060348; biological_process; bone development GO:0090309; biological_process; positive regulation of DNA methylation-dependent heterochromatin assembly GO:1990841; molecular_function; promoter-specific chromatin binding
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0182300.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)