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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0181030

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0181030
Locus	HORVU.MOREX.r2.2HG0181030.1
URL	Gene Ontology GO:0061505 [ Show all 49 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 52 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: rRNA N-glycosidase The GO term GO:0061505 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003918 GO:0000166; molecular_function; nucleotide binding GO:0000287; molecular_function; magnesium ion binding GO:0000712; biological_process; resolution of meiotic recombination intermediates GO:0000793; cellular_component; condensed chromosome GO:0000819; biological_process; sister chromatid segregation GO:0002244; biological_process; hematopoietic progenitor cell differentiation GO:0003677; molecular_function; DNA binding GO:0003682; molecular_function; chromatin binding GO:0003723; molecular_function; RNA binding GO:0003916; molecular_function; DNA topoisomerase activity GO:0003918; molecular_function; DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity GO:0005080; molecular_function; protein kinase C binding GO:0005515; molecular_function; protein binding GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005730; cellular_component; nucleolus GO:0005737; cellular_component; cytoplasm GO:0006259; biological_process; DNA metabolic process GO:0006265; biological_process; DNA topological change GO:0006266; biological_process; DNA ligation GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0007059; biological_process; chromosome segregation GO:0008022; molecular_function; protein C-terminus binding GO:0008094; molecular_function; DNA-dependent ATPase activity GO:0008144; molecular_function; drug binding GO:0008301; molecular_function; DNA binding, bending GO:0009330; cellular_component; DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex GO:0016853; molecular_function; isomerase activity GO:0019899; molecular_function; enzyme binding GO:0030261; biological_process; chromosome condensation GO:0030263; biological_process; apoptotic chromosome condensation GO:0032991; cellular_component; protein-containing complex GO:0040016; biological_process; embryonic cleavage GO:0042752; biological_process; regulation of circadian rhythm GO:0042803; molecular_function; protein homodimerization activity GO:0042826; molecular_function; histone deacetylase binding GO:0043065; biological_process; positive regulation of apoptotic process GO:0043130; molecular_function; ubiquitin binding GO:0044774; biological_process; mitotic DNA integrity checkpoint GO:0045070; biological_process; positive regulation of viral genome replication GO:0045870; biological_process; positive regulation of single stranded viral RNA replication via double stranded DNA intermediate GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046872; molecular_function; metal ion binding GO:0046982; molecular_function; protein heterodimerization activity GO:0048511; biological_process; rhythmic process GO:1905463; biological_process; negative regulation of DNA duplex unwinding GO:1990904; cellular_component; ribonucleoprotein complex
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0181030.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)