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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0179820

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0179820
Locus	HORVU.MOREX.r2.2HG0179820.1
URL	Gene Ontology GO:0000166 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 22 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Volume-regulated anion channel subunit LRRC8C GO:0000166; molecular_function; nucleotide binding GO:0000792; cellular_component; heterochromatin GO:0004839; molecular_function; ubiquitin activating enzyme activity GO:0005515; molecular_function; protein binding GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005737; cellular_component; cytoplasm GO:0005739; cellular_component; mitochondrion GO:0005765; cellular_component; lysosomal membrane GO:0005829; cellular_component; cytosol GO:0006464; biological_process; cellular protein modification process GO:0006511; biological_process; ubiquitin-dependent protein catabolic process GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0008641; molecular_function; ubiquitin-like modifier activating enzyme activity GO:0010008; cellular_component; endosome membrane GO:0016567; biological_process; protein ubiquitination GO:0016874; molecular_function; ligase activity GO:0030057; cellular_component; desmosome GO:0030867; cellular_component; rough endoplasmic reticulum membrane
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0179820.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)