Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.2HG0166560

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0166560
Locus	HORVU.MOREX.r2.2HG0166560.1
URL	Gene Ontology GO:0000139 [ Show all 39 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 41 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: F-box family protein GO:0000139; cellular_component; Golgi membrane GO:0000246; molecular_function; delta24(24-1) sterol reductase activity GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005783; cellular_component; endoplasmic reticulum GO:0005789; cellular_component; endoplasmic reticulum membrane GO:0005794; cellular_component; Golgi apparatus GO:0005829; cellular_component; cytosol GO:0005856; cellular_component; cytoskeleton GO:0006629; biological_process; lipid metabolic process GO:0006694; biological_process; steroid biosynthetic process GO:0006695; biological_process; cholesterol biosynthetic process GO:0006979; biological_process; response to oxidative stress GO:0007265; biological_process; Ras protein signal transduction GO:0008104; biological_process; protein localization GO:0008202; biological_process; steroid metabolic process GO:0008203; biological_process; cholesterol metabolic process GO:0008285; biological_process; negative regulation of cell population proliferation GO:0009725; biological_process; response to hormone GO:0009888; biological_process; tissue development GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016125; biological_process; sterol metabolic process GO:0016126; biological_process; sterol biosynthetic process GO:0016491; molecular_function; oxidoreductase activity GO:0016614; molecular_function; oxidoreductase activity, acting on CH-OH group of donors GO:0016628; molecular_function; oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor GO:0019899; molecular_function; enzyme binding GO:0030539; biological_process; male genitalia development GO:0031639; biological_process; plasminogen activation GO:0042605; molecular_function; peptide antigen binding GO:0042987; biological_process; amyloid precursor protein catabolic process GO:0043066; biological_process; negative regulation of apoptotic process GO:0043154; biological_process; negative regulation of cysteine-type endopeptidase activity involved in apoptotic process GO:0043588; biological_process; skin development GO:0050614; molecular_function; delta24-sterol reductase activity GO:0050660; molecular_function; flavin adenine dinucleotide binding GO:0055114; biological_process; oxidation-reduction process GO:0061024; biological_process; membrane organization
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0166560.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)