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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0148400

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0148400
Locus	HORVU.MOREX.r2.2HG0148400.1
URL	Gene Ontology GO:0000209 [ Show all 32 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 34 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Adenine phosphoribosyltransferase GO:0000209; biological_process; protein polyubiquitination GO:0004842; molecular_function; ubiquitin-protein transferase activity GO:0005128; molecular_function; erythropoietin receptor binding GO:0005135; molecular_function; interleukin-3 receptor binding GO:0006914; biological_process; autophagy GO:0006915; biological_process; apoptotic process GO:0008270; molecular_function; zinc ion binding GO:0008285; biological_process; negative regulation of cell population proliferation GO:0010468; biological_process; regulation of gene expression GO:0010498; biological_process; proteasomal protein catabolic process GO:0016567; biological_process; protein ubiquitination GO:0016740; molecular_function; transferase activity GO:0017160; molecular_function; Ral GTPase binding GO:0019904; molecular_function; protein domain specific binding GO:0030336; biological_process; negative regulation of cell migration GO:0030971; molecular_function; receptor tyrosine kinase binding GO:0043408; biological_process; regulation of MAPK cascade GO:0045619; biological_process; regulation of lymphocyte differentiation GO:0045637; biological_process; regulation of myeloid cell differentiation GO:0045732; biological_process; positive regulation of protein catabolic process GO:0046872; molecular_function; metal ion binding GO:0048471; cellular_component; perinuclear region of cytoplasm GO:0051091; biological_process; positive regulation of DNA-binding transcription factor activity GO:0051865; biological_process; protein autoubiquitination GO:0051896; biological_process; regulation of protein kinase B signaling GO:0061630; molecular_function; ubiquitin protein ligase activity GO:0071782; cellular_component; endoplasmic reticulum tubular network GO:0097191; biological_process; extrinsic apoptotic signaling pathway GO:1901525; biological_process; negative regulation of mitophagy GO:2000114; biological_process; regulation of establishment of cell polarity GO:2000377; biological_process; regulation of reactive oxygen species metabolic process GO:2000379; biological_process; positive regulation of reactive oxygen species metabolic process
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0148400.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)