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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0147440

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0147440
Locus	HORVU.MOREX.r2.2HG0147440.1
URL	Gene Ontology GO:0003676 [ Show all 40 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 42 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Cytochrome b561 and DOMON domain-containing protein GO:0003676; molecular_function; nucleic acid binding GO:0003677; molecular_function; DNA binding GO:0003723; molecular_function; RNA binding GO:0003824; molecular_function; catalytic activity GO:0003887; molecular_function; DNA-directed DNA polymerase activity GO:0003964; molecular_function; RNA-directed DNA polymerase activity GO:0004190; molecular_function; aspartic-type endopeptidase activity GO:0004518; molecular_function; nuclease activity GO:0004519; molecular_function; endonuclease activity GO:0004523; molecular_function; RNA-DNA hybrid ribonuclease activity GO:0004533; molecular_function; exoribonuclease H activity GO:0005198; molecular_function; structural molecule activity GO:0006278; biological_process; RNA-dependent DNA biosynthetic process GO:0006310; biological_process; DNA recombination GO:0006508; biological_process; proteolysis GO:0008152; biological_process; metabolic process GO:0008233; molecular_function; peptidase activity GO:0008270; molecular_function; zinc ion binding GO:0015074; biological_process; DNA integration GO:0016020; cellular_component; membrane GO:0016032; biological_process; viral process GO:0016740; molecular_function; transferase activity GO:0016779; molecular_function; nucleotidyltransferase activity GO:0016787; molecular_function; hydrolase activity GO:0019012; cellular_component; virion GO:0019013; cellular_component; viral nucleocapsid GO:0019028; cellular_component; viral capsid GO:0020002; cellular_component; host cell plasma membrane GO:0030430; cellular_component; host cell cytoplasm GO:0033644; cellular_component; host cell membrane GO:0039657; biological_process; suppression by virus of host gene expression GO:0042025; cellular_component; host cell nucleus GO:0044826; biological_process; viral genome integration into host DNA GO:0046718; biological_process; viral entry into host cell GO:0046872; molecular_function; metal ion binding GO:0075713; biological_process; establishment of integrated proviral latency GO:0075732; biological_process; viral penetration into host nucleus GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis GO:0090502; biological_process; RNA phosphodiester bond hydrolysis, endonucleolytic GO:0090503; biological_process; RNA phosphodiester bond hydrolysis, exonucleolytic
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0147440.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)