Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.2HG0147420

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0147420
Locus	HORVU.MOREX.r2.2HG0147420.1
URL	Gene Ontology GO:0000502 [ Show all 17 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 19 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: AGAMOUS-like 42 GO:0000502; cellular_component; proteasome complex GO:0002376; biological_process; immune system process GO:0004175; molecular_function; endopeptidase activity GO:0004298; molecular_function; threonine-type endopeptidase activity GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0005839; cellular_component; proteasome core complex GO:0006508; biological_process; proteolysis GO:0008233; molecular_function; peptidase activity GO:0016787; molecular_function; hydrolase activity GO:0019774; cellular_component; proteasome core complex, beta-subunit complex GO:0019882; biological_process; antigen processing and presentation GO:0051603; biological_process; proteolysis involved in cellular protein catabolic process GO:0070628; molecular_function; proteasome binding GO:1990111; cellular_component; spermatoproteasome complex GO:2000116; biological_process; regulation of cysteine-type endopeptidase activity
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0147420.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)