Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.2HG0146330

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0146330
Locus	HORVU.MOREX.r2.2HG0146330.1
URL	Gene Ontology GO:0005509 [ Show all 24 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 26 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: ATP-dependent RNA helicase DeaD GO:0005509; molecular_function; calcium ion binding GO:0005548; molecular_function; phospholipid transporter activity GO:0005622; cellular_component; intracellular GO:0005737; cellular_component; cytoplasm GO:0005783; cellular_component; endoplasmic reticulum GO:0005789; cellular_component; endoplasmic reticulum membrane GO:0005794; cellular_component; Golgi apparatus GO:0005811; cellular_component; lipid droplet GO:0005815; cellular_component; microtubule organizing center GO:0005829; cellular_component; cytosol GO:0008526; molecular_function; phosphatidylinositol transfer activity GO:0015031; biological_process; protein transport GO:0015914; biological_process; phospholipid transport GO:0016020; cellular_component; membrane GO:0030496; cellular_component; midbody GO:0030971; molecular_function; receptor tyrosine kinase binding GO:0031210; molecular_function; phosphatidylcholine binding GO:0032154; cellular_component; cleavage furrow GO:0032580; cellular_component; Golgi cisterna membrane GO:0035091; molecular_function; phosphatidylinositol binding GO:0036464; cellular_component; cytoplasmic ribonucleoprotein granule GO:0044297; cellular_component; cell body GO:0046872; molecular_function; metal ion binding GO:0070300; molecular_function; phosphatidic acid binding
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0146330.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)