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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0123730

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0123730
Locus	HORVU.MOREX.r2.2HG0123730.1
URL	Gene Ontology GO:0000166 [ Show all 21 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 23 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transposon protein, putative, Mariner sub-class GO:0000166; molecular_function; nucleotide binding GO:0000502; cellular_component; proteasome complex GO:0001824; biological_process; blastocyst development GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0008540; cellular_component; proteasome regulatory particle, base subcomplex GO:0016234; cellular_component; inclusion body GO:0016787; molecular_function; hydrolase activity GO:0016887; molecular_function; ATPase activity GO:0017025; molecular_function; TBP-class protein binding GO:0022624; cellular_component; proteasome accessory complex GO:0030163; biological_process; protein catabolic process GO:0030433; biological_process; ubiquitin-dependent ERAD pathway GO:0031595; cellular_component; nuclear proteasome complex GO:0031597; cellular_component; cytosolic proteasome complex GO:0036402; molecular_function; proteasome-activating ATPase activity GO:0045202; cellular_component; synapse GO:0045899; biological_process; positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GO:1901800; biological_process; positive regulation of proteasomal protein catabolic process
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0123730.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)