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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0118780

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0118780
Locus	HORVU.MOREX.r2.2HG0118780.1
URL	Gene Ontology GO:0001077 [ Show all 90 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 94 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Gag-Pol polyprotein The GO term GO:0001077 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0001228 GO:0003712; molecular_function; transcription coregulator activity The GO term GO:0001104 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003712 The GO term GO:0003705 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0000981 GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0000978; molecular_function; RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981; molecular_function; DNA-binding transcription factor activity, RNA polymerase II-specific GO:0001190; molecular_function; obsolete transcriptional activator activity, RNA polymerase II transcription factor binding GO:0001228; molecular_function; DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001570; biological_process; vasculogenesis GO:0001947; biological_process; heart looping GO:0003007; biological_process; heart morphogenesis GO:0003148; biological_process; outflow tract septum morphogenesis GO:0003151; biological_process; outflow tract morphogenesis GO:0003161; biological_process; cardiac conduction system development GO:0003162; biological_process; atrioventricular node development GO:0003166; biological_process; bundle of His development GO:0003168; biological_process; Purkinje myocyte differentiation GO:0003208; biological_process; cardiac ventricle morphogenesis GO:0003211; biological_process; cardiac ventricle formation GO:0003221; biological_process; right ventricular cardiac muscle tissue morphogenesis GO:0003222; biological_process; ventricular trabecula myocardium morphogenesis GO:0003278; biological_process; apoptotic process involved in heart morphogenesis GO:0003285; biological_process; septum secundum development GO:0003342; biological_process; proepicardium development GO:0003350; biological_process; pulmonary myocardium development GO:0003677; molecular_function; DNA binding GO:0003682; molecular_function; chromatin binding GO:0003700; molecular_function; DNA-binding transcription factor activity GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005667; cellular_component; transcription factor complex GO:0005737; cellular_component; cytoplasm GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006357; biological_process; regulation of transcription by RNA polymerase II GO:0006366; biological_process; transcription by RNA polymerase II GO:0007275; biological_process; multicellular organism development GO:0007507; biological_process; heart development GO:0007512; biological_process; adult heart development GO:0008134; molecular_function; transcription factor binding GO:0008284; biological_process; positive regulation of cell population proliferation GO:0010628; biological_process; positive regulation of gene expression GO:0010667; biological_process; negative regulation of cardiac muscle cell apoptotic process GO:0010735; biological_process; positive regulation of transcription via serum response element binding GO:0010736; molecular_function; serum response element binding GO:0010765; biological_process; positive regulation of sodium ion transport GO:0010832; biological_process; negative regulation of myotube differentiation GO:0030097; biological_process; hemopoiesis GO:0030154; biological_process; cell differentiation GO:0030509; biological_process; BMP signaling pathway GO:0030878; biological_process; thyroid gland development GO:0032991; cellular_component; protein-containing complex GO:0032993; cellular_component; protein-DNA complex GO:0035050; biological_process; embryonic heart tube development GO:0042803; molecular_function; protein homodimerization activity GO:0043066; biological_process; negative regulation of apoptotic process GO:0043565; molecular_function; sequence-specific DNA binding GO:0044212; molecular_function; transcription regulatory region DNA binding GO:0045214; biological_process; sarcomere organization GO:0045666; biological_process; positive regulation of neuron differentiation GO:0045823; biological_process; positive regulation of heart contraction GO:0045892; biological_process; negative regulation of transcription, DNA-templated GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046982; molecular_function; protein heterodimerization activity GO:0048536; biological_process; spleen development GO:0048738; biological_process; cardiac muscle tissue development GO:0051891; biological_process; positive regulation of cardioblast differentiation GO:0055005; biological_process; ventricular cardiac myofibril assembly GO:0055007; biological_process; cardiac muscle cell differentiation GO:0055008; biological_process; cardiac muscle tissue morphogenesis GO:0055014; biological_process; atrial cardiac muscle cell development GO:0055015; biological_process; ventricular cardiac muscle cell development GO:0055117; biological_process; regulation of cardiac muscle contraction GO:0060037; biological_process; pharyngeal system development GO:0060038; biological_process; cardiac muscle cell proliferation GO:0060043; biological_process; regulation of cardiac muscle cell proliferation GO:0060047; biological_process; heart contraction GO:0060048; biological_process; cardiac muscle contraction GO:0060070; biological_process; canonical Wnt signaling pathway GO:0060261; biological_process; positive regulation of transcription initiation from RNA polymerase II promoter GO:0060347; biological_process; heart trabecula formation GO:0060412; biological_process; ventricular septum morphogenesis GO:0060413; biological_process; atrial septum morphogenesis GO:0060928; biological_process; atrioventricular node cell development GO:0060929; biological_process; atrioventricular node cell fate commitment GO:0060971; biological_process; embryonic heart tube left/right pattern formation GO:0072358; biological_process; cardiovascular system development GO:0090090; biological_process; negative regulation of canonical Wnt signaling pathway GO:0090575; cellular_component; RNA polymerase II transcription factor complex GO:1903779; biological_process; regulation of cardiac conduction
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0118780.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)