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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0077960

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0077960
Locus	HORVU.MOREX.r2.1HG0077960.1
URL	Gene Ontology GO:0001836 [ Show all 32 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 34 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: F-box family protein GO:0001836; biological_process; release of cytochrome c from mitochondria GO:0001844; biological_process; protein insertion into mitochondrial membrane involved in apoptotic signaling pathway GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005739; cellular_component; mitochondrion GO:0005741; cellular_component; mitochondrial outer membrane GO:0005829; cellular_component; cytosol GO:0006915; biological_process; apoptotic process GO:0006919; biological_process; activation of cysteine-type endopeptidase activity involved in apoptotic process GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0010498; biological_process; proteasomal protein catabolic process GO:0010907; biological_process; positive regulation of glucose metabolic process GO:0010917; biological_process; negative regulation of mitochondrial membrane potential GO:0032461; biological_process; positive regulation of protein oligomerization GO:0042149; biological_process; cellular response to glucose starvation GO:0042981; biological_process; regulation of apoptotic process GO:0043029; biological_process; T cell homeostasis GO:0043065; biological_process; positive regulation of apoptotic process GO:0043280; biological_process; positive regulation of cysteine-type endopeptidase activity involved in apoptotic process GO:0043331; biological_process; response to dsRNA GO:0043517; biological_process; positive regulation of DNA damage response, signal transduction by p53 class mediator GO:0046902; biological_process; regulation of mitochondrial membrane permeability GO:0051607; biological_process; defense response to virus GO:0071456; biological_process; cellular response to hypoxia GO:0072332; biological_process; intrinsic apoptotic signaling pathway by p53 class mediator GO:0072593; biological_process; reactive oxygen species metabolic process GO:0090200; biological_process; positive regulation of release of cytochrome c from mitochondria GO:0097193; biological_process; intrinsic apoptotic signaling pathway GO:1900740; biological_process; positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway GO:1902043; biological_process; positive regulation of extrinsic apoptotic signaling pathway via death domain receptors GO:1902237; biological_process; positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway GO:2001244; biological_process; positive regulation of intrinsic apoptotic signaling pathway
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0077960.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)